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![]() ![]() Increasing this figure will increase GPU basecalling performance when it is enabled. Max chunks per runner ( -chunks_per_runner): The maximum number of chunks which can be submitted to a single neural network runner before it starts computation. ![]() When performing GPU basecalling there is always one CPU support thread per GPU caller, so the number of callers ( -num_callers) dictates the maximum number of CPU threads used.For reference the fast calling mode was ~8 minutes. So from the above we see in high accuracy mode it take the Xavier ~41 minutes to complete the base calling using the default configuration files. Model file: /opt/ont/guppy/data/template_r9.4.1_450bps_modbases_dam-dcm-cpg_hac.jsn ONT Guppy basecalling software version 3.4.1+213a60d0Ĭonfig file: /opt/ont/guppy/data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac.cfg It automatically solves conflicts between USB drives and network or subset drives of the currently logged-on user.įurthermore, you can define new default letters for USB drives and much more.Guppy_basecaller -disable_pings -compress_fastq -c dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac.cfg -fast5_out -i flongle_fast5_pass/ -s flongle_hac_fastq -x 'auto ' -recursive $ guppy_basecaller -compress_fastq -c dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac.cfg -i flongle_fast5_pass/ -s flongle_hac_fastq -x 'auto' -recursive Running as a service makes it independent of the logged-on user's privileges, so there is no need to give the users the privilege to change drive letters. USB Drive Letter Manager (USBDLM) is a Windows service that controls Window's drive letter assignment for USB drives.
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